This page lists software packages only.
For code to implement methods and reproduce experiments from individual papers, links to code are placed next to each paper title (go to the Research tab).

SEMID: Identifiability of linear structural equation models

R package for determining whether the parameters of mixed graphical model are identifiable from the resulting data distribution. (With Mathias Drton.)

Related papers:
Half-trek criterion for generic identifiability of linear structural equation models, Rina Foygel, Jan Draisma, Mathias Drton (arxiv link).
Global identifiability of linear structural equation models, Mathias Drton, Rina Foygel, Seth Sullivant (arxiv link).

Knockoff filter for controlling FDR in sparse linear regression

R package and Matlab package implementing the knockoff filter for false discovery rate control when selecting variables in a lineaer regression. (With Emmanuel Candès and Evan Patterson.)

Related paper: Controlling the False Discovery Rate via Knockoffs, Rina Foygel Barber and Emmanuel Candès (arxiv link).